Studi Kasus Lingusql: Aplikasi Transaksi Perdagangan Saham

Proses pengembangan perangkat lunak yang ideal selalu mensyaratkan pengujian yang menyeluruh untuk memperoleh hasil perangkat lunak yang memiliki tingkat kebenaran tertentu. Namun pada prakteknya pengujian secara menyeluruh sangat jarang dilakukan karena membutuhkan sumber daya waktu dan biaya yang banyak. LinguSQL adalah sebuah tool pengembangan eksperimen yang mengintegrasikan proses pengujian secara whitebox dan blackbox ke dalam aktifitas pembuatan kodenya. Paper ini memaparkan penerapan LinguSQL dalam pengembangan studi kasus sebuah aplikasi transaksi perdagangan saham. Penerapan LinguSQL pada studi kasus yang cukup kompleks diharapkan akan menampilkan keuntungan konsep pengujian secara menyeluruh serta, dalam konteks implementasi tool, menunjukkan bagian-bagian yang masih perlu dikembangkan lebih lanjut. The ideal process software development always requires thorough testing to obtain the software that has a certain degree of truth. However, in practice very rarely thorough testing done because it requires so much resources of time and cost. LinguSQL is an experimental tool that integrates the development process is whitebox and blackbox testing in manufacturing activity code. This paper describes the implementastion of LinguSQL in the development of a stock trading application case study. Implementation of LinguSQL on a complex case study will show the expected benefit of testing the concept a thorough and in the context of the implementation tool, showing the parts that still need to be developed further

BatMis: A fast algorithm for k-mismatch mapping

10.1093/bioinformatics/bts339Bioinformatics28162122-2128BOIN

Complete genome sequence of micrococcus luteus strain SGAir0127, isolated from indoor air samples from Singapore

Micrococcus luteus strain SGAir0127 was isolated from indoor air samples collected in Singapore. The assembly, based on single-molecule real-time sequencing reads, resulted in two contigs, one chromosomal contig with a length of 2.57 Mbp and one nonchromosomal contig of 8.68 kbp. The genome has a total of 2,564 genes.Ministry of Education (MOE)Published versionThis work was supported by a Singapore Ministry of Education Academic Research Fund Tier 3 grant (MOE2013-T3-1-013)

Complete genome sequence of Lelliottia nimipressuralis type strain SGAir0187, isolated from tropical air collected in Singapore

Lelliottia nimipressuralis type strain SGAir0187 was isolated from tropical air samples collected in Singapore. The genome was assembled with an average coverage of 180-fold using Pacific Biosciences long reads and Illumina MiSeq paired-end reads. The genome measures 4.8 Mb and contains 4,424 protein-coding genes, 83 tRNAs, and 25 rRNAs.MOE (Min. of Education, S’pore)Published versio

Complete genome sequence of Acinetobacter schindleri SGAir0122 isolated from Singapore air

Acinetobacter schindleri strain SGAir0122 was isolated from tropical air samples collected in Singapore. The prevalence of nosocomial infection caused by this Gram-negative bacterium indicates its clinical significance as an opportunistic human pathogen. Its complete genome consists of one chromosome of 3.105 Mb and a plasmid of 181 kb.MOE (Min. of Education, S’pore)Published versio

The microbiomes of blowflies and houseflies as bacterial transmission reservoirs

Blowflies and houseflies are mechanical vectors inhabiting synanthropic environments around the world. They feed and breed in fecal and decaying organic matter, but the microbiome they harbour and transport is largely uncharacterized. We sampled 116 individual houseflies and blowflies from varying habitats on three continents and subjected them to high-coverage, whole-genome shotgun sequencing. This allowed for genomic and metagenomic analyses of the host-associated microbiome at the species level. Both fly host species segregate based on principal coordinate analysis of their microbial communities, but they also show an overlapping core microbiome. Legs and wings displayed the largest microbial diversity and were shown to be an important route for microbial dispersion. The environmental sequencing approach presented here detected a stochastic distribution of human pathogens, such as Helicobacter pylori, thereby demonstrating the potential of flies as proxies for environmental and public health surveillance.

Genome sequence of Pantoea ananatis SGAir0210, isolated from outdoor air in Singapore

Pantoea ananatis SGAir0210 was isolated from outdoor air collected in Singapore. The genome was assembled from long reads generated by single-molecule real-time sequencing complemented with short reads. The genome size was approximately 4.81 Mb, with 4,303 protein-coding genes, 80 tRNAs, and 22 rRNAs identified.MOE (Min. of Education, S’pore)Published versio

Complete genome sequence of Acinetobacter indicus type strain SGAir0564 isolated from tropical air collected in Singapore

Acinetobacter indicus (Gammaproteobacteria) is a strict aerobic nonmotile bacterium. The strain SGAir0564 was isolated from air samples collected in Singapore. The complete genome is 3.1 Mb and was assembled using a combination of short and long reads. The genome contains 2,808 protein-coding genes, 80 tRNAs, and 21 rRNA subunits.MOE (Min. of Education, S’pore)Published versio

Complete genome sequence of Pseudomonas stutzeri type strain SGAir0442, isolated from Singapore air samples

Pseudomonas stutzeri strain SGAir0442 was isolated from tropical air samples collected in Singapore. It is a Gram-negative denitrifying bacterium and an opportunistic human pathogen. Its complete genome consists of one chromosome of 4.52 Mb, containing 4,129 protein-coding genes, 12 rRNA subunits, and 62 tRNAs.MOE (Min. of Education, S’pore)Published versio